SRX13941916
ARID1A ChIP-Seq of MCF-7 breast cancer cells treated with Veh

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ARID1A

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

isolate
not applicable
age
not applicable
biomaterial_provider
University of Debrecen, OTREL
sex
not applicable
tissue
not applicable
cell_line
MCF-7
cell_type
breast adenocarcinoma cells
treatment
Veh: DMSO/Ethanol (50/50)
antibody
ARID1A (Santa Cruz Biotechnology, PSG3X, sc-32761x, Lot# C0116, 8µg)

Sequenced DNA Library

library_name
hs_MCF-7_Veh_ARID1A_ChIP-Seq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
15666735
Reads aligned (%)
77.1
Duplicates removed (%)
14.3
Number of peaks
2248 (qval < 1E-05)

hg19

Number of total reads
15666735
Reads aligned (%)
76.7
Duplicates removed (%)
14.9
Number of peaks
2316 (qval < 1E-05)

Base call quality data from DBCLS SRA