Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Art1

Cell type

Cell type Class
Unclassified
Cell type
Unclassified
NA
NA

Attributes by original data submitter

Sample

source_name
YAC-1
experiment
C646_GSK126/Exp004-5
histone modification
H3
mnase units
25u
treatment
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Cell lysis immediately followed by MNase digestion of native chromatin, T7-adapter ligation, pool-and-split multiplexing, immunoprecipitation and magnetic bead isolation of immunoprecipitated DNA. Mint-ChIP: In vitro transcription, reverse transcription, PCR (see manuscript).

Sequencing Platform

instrument_model
NextSeq 500

mm10

Number of total reads
815499
Reads aligned (%)
92.8
Duplicates removed (%)
56.8
Number of peaks
0 (qval < 1E-05)

mm9

Number of total reads
815499
Reads aligned (%)
92.6
Duplicates removed (%)
57.1
Number of peaks
0 (qval < 1E-05)

Base call quality data from DBCLS SRA