Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ATF3

Cell type

Cell type Class
Cardiovascular
Cell type
AC16
NA
NA

Attributes by original data submitter

Sample

source_name
AC16 cardiomyocyte cell line
cell type
human cardiomyocyte cell line
treatment
untreated
chip antibody
ATF3(CST, #33593)

Sequenced DNA Library

library_name
GSM5825392
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and histone-DNA complexes were isolated with antibody. After the DNA sample passes the test, it is randomly interrupted by covaris ultrasonic crusher, and then repaired at the end, added with a tail and added with a tail,The whole library was prepared by sequencing, purification and PCR amplification. After the library is built, qubit2.0 is used first perform preliminary quantification, dilute the library to 1.5ng/ul, and then use Agilent 2100 to detect the insert size of the library. After the size meets the expectation, the effective concentration of the library is accurately quantified by Q-PCR (the effective concentration of the library is > 2nm), to ensure the quality of the library.

Sequencing Platform

instrument_model
Illumina HiSeq 2500

hg38

Number of total reads
20081819
Reads aligned (%)
94.5
Duplicates removed (%)
16.3
Number of peaks
543 (qval < 1E-05)

hg19

Number of total reads
20081819
Reads aligned (%)
93.7
Duplicates removed (%)
16.8
Number of peaks
291 (qval < 1E-05)

Base call quality data from DBCLS SRA