Antigen

Antigen Class

TFs and others

Antigen

CTCF

Cell type

Cell type Class

Others

Cell type

5637

Primary Tissue

Bladder

Tissue Diagnosis

Carcinoma

Sample

source_name

Bladder cancer cell lines, ChIP for 6 Histones marks, CTCF and FOXA1

cell line

5637

antibody

CTCF

Sequenced DNA Library

library_name

GSM5821796

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

Fixation in 10% Formaldehyde. ChIP using Active Motif High sensitivity ChIP kit

Sequencing Platform

instrument_model

Illumina HiSeq 4000

hg38

Number of total reads

53882769

Reads aligned (%)

99.3

Duplicates removed (%)

42.0

Number of peaks

53303 (qval < 1E-05)

hg19

Number of total reads

53882769

Reads aligned (%)

98.9

Duplicates removed (%)

42.6

Number of peaks

53108 (qval < 1E-05)