SRX136959
Reference Epigenome: ChIP-Seq Analysis of H3K36me3 in Human Gastric Tissue

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Digestive tract
Cell type
Gastric primary sample
NA
NA

Attributes by original data submitter

Sample

MOLECULE
genomic DNA
DISEASE
None
BIOMATERIAL_PROVIDER
Shin Lin, Stanford University
BIOMATERIAL_TYPE
Primary Tissue
TISSUE_TYPE
Gastric
TISSUE_DEPOT
N/A
COLLECTION_METHOD
Autopsy
DONOR_ID
STL003
DONOR_AGE
34
DONOR_HEALTH_STATUS
polysubstance abuse (NO diabetes, hypertension, coronary artery disease, cancer)
DONOR_SEX
male
DONOR_ETHNICITY
Caucasian
sample_term_id
UBERON_0000945

Sequenced DNA Library

library_name
AY185
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
32689282
Reads aligned (%)
89.1
Duplicates removed (%)
11.7
Number of peaks
2679 (qval < 1E-05)

hg19

Number of total reads
32689282
Reads aligned (%)
88.5
Duplicates removed (%)
12.8
Number of peaks
2681 (qval < 1E-05)

Base call quality data from DBCLS SRA