Antigen

Antigen Class

No description

Antigen

NA

Cell type

Cell type Class

Digestive tract

Cell type

Gastric primary sample

NA

NA

Sample

MOLECULE

genomic DNA

DISEASE

None

BIOMATERIAL_PROVIDER

Shin Lin, Stanford University

BIOMATERIAL_TYPE

Primary Tissue

TISSUE_TYPE

Gastric

TISSUE_DEPOT

N/A

COLLECTION_METHOD

Autopsy

DONOR_ID

STL003

DONOR_AGE

34

DONOR_HEALTH_STATUS

polysubstance abuse (NO diabetes, hypertension, coronary artery disease, cancer)

DONOR_SEX

male

DONOR_ETHNICITY

Caucasian

sample_term_id

UBERON_0000945

Sequenced DNA Library

library_name

ERROR: cannot retrieve data from NCBI: too many requests

library_strategy

ERROR: cannot retrieve data from NCBI: too many requests

library_source

ERROR: cannot retrieve data from NCBI: too many requests

library_selection

ERROR: cannot retrieve data from NCBI: too many requests

library_construction_protocol

ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model

ERROR: cannot retrieve data from NCBI: too many requests

cycle_sequence

ERROR: cannot retrieve data from NCBI: too many requests

cycle_count

ERROR: cannot retrieve data from NCBI: too many requests

flow_sequence

ERROR: cannot retrieve data from NCBI: too many requests

flow_count

ERROR: cannot retrieve data from NCBI: too many requests

key_sequence

ERROR: cannot retrieve data from NCBI: too many requests

hg38

Number of total reads

24635494

Reads aligned (%)

94.7

Duplicates removed (%)

13.5

Number of peaks

927 (qval < 1E-05)

hg19

Number of total reads

24635494

Reads aligned (%)

93.7

Duplicates removed (%)

15.5

Number of peaks

1152 (qval < 1E-05)