Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Digestive tract
Cell type
BGC-823
NA
NA

Attributes by original data submitter

Sample

isolate
BGC823 cells stably transfected with P16-Dnmt or pTRIPZ control vector
age
62 years old
biomaterial_provider
Prof. Yang Ke
sex
male
tissue
stomach
cell_line
BGC823
cell_subtype
epithelial cells
cell_type
gastric adenocarcinoma
culture_collection
CBTCCCAS: BGC-823
dev_stage
adult
disease
gastric cancer
disease_stage
resectable
ethnicity
Chinese
health_state
cancer
karyotype
sub-triploidid
phenotype
cancer cell
sample_type
cell culture
treatment
surgical resection

Sequenced DNA Library

library_name
P16Dnmt+14d Myc
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2500

hg38

Number of total reads
204331164
Reads aligned (%)
95.8
Duplicates removed (%)
26.8
Number of peaks
5592 (qval < 1E-05)

hg19

Number of total reads
204331164
Reads aligned (%)
95.1
Duplicates removed (%)
28.4
Number of peaks
4514 (qval < 1E-05)

Base call quality data from DBCLS SRA