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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: NA
wikigenes
PDBj
CellType: BGC-823
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX1367371
P16Dnmt-ChIP-Seq for BGC823 cells
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
No description
Antigen
NA
Cell type
Cell type Class
Digestive tract
Cell type
BGC-823
NA
NA
Attributes by original data submitter
Sample
isolate
BGC823 cells stably transfected with P16-Dnmt or pTRIPZ control vector
age
62 years old
biomaterial_provider
Prof. Yang Ke
sex
male
tissue
stomach
cell_line
BGC823
cell_subtype
epithelial cells
cell_type
gastric adenocarcinoma
culture_collection
CBTCCCAS: BGC-823
dev_stage
adult
disease
gastric cancer
disease_stage
resectable
ethnicity
Chinese
health_state
cancer
karyotype
sub-triploidid
phenotype
cancer cell
sample_type
cell culture
treatment
surgical resection
Sequenced DNA Library
library_name
P16Dnmt+14d Myc
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina HiSeq 2500
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
204331164
Reads aligned (%)
95.8
Duplicates removed (%)
26.8
Number of peaks
5592 (qval < 1E-05)
hg19
Number of total reads
204331164
Reads aligned (%)
95.1
Duplicates removed (%)
28.4
Number of peaks
4514 (qval < 1E-05)
Base call quality data from
DBCLS SRA