SRX13652962
GSM5776373: fip1 ChIP in control sample repeat 2; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
FIP1L1

Cell type

Cell type Class
Uterus
Cell type
HeLa
Primary Tissue
Cervix
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
fip1 ChIP in control sample repeat 2
cell line
HeLa
transfection
control

Sequenced DNA Library

library_name
GSM5776373
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP-seqs were carried out using standard protocol library were prepared using ChIP-seq preparation kit (Vazyme)

Sequencing Platform

instrument_model
Illumina NovaSeq 6000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
40045018
Reads aligned (%)
67.4
Duplicates removed (%)
15.8
Number of peaks
1617 (qval < 1E-05)

hg19

Number of total reads
40045018
Reads aligned (%)
66.9
Duplicates removed (%)
16.1
Number of peaks
956 (qval < 1E-05)

Base call quality data from DBCLS SRA