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For hg38
BigWig
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For hg19
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Peak-call (q < 1E-10)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: NA
wikigenes
PDBj
CellType: hESC derived trophoblast cells
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX135229
Reference Epigenome: ChIP-Seq Analysis of H3K79me1 in BMP4 Trophoblast Cells
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
No description
Antigen
NA
Cell type
Cell type Class
Pluripotent stem cell
Cell type
hESC derived trophoblast cells
NA
NA
Attributes by original data submitter
Sample
MOLECULE
genomic DNA
DISEASE
None
BIOMATERIAL_PROVIDER
James Thomson Laboratory
BIOMATERIAL_TYPE
Cell Line
LINE
H1
LINEAGE
Embryonic Stem Cell
DIFFERENTIATION_STAGE
Embryonic stem cell differentiated into trophoblast by treatment with BMP4
DIFFERENTIATION_METHOD
H1 cells were cultured in mTeSR1 medium without bFGF containing 50ng/mL BMP4 for 5 days
PASSAGE
31
MEDIUM
mTeSR1
SEX
male
BATCH
BMP4-10
sample_term_id
UBERON_0000088
Sequenced DNA Library
library_name
AY229
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
32981011
Reads aligned (%)
96.2
Duplicates removed (%)
6.0
Number of peaks
25010 (qval < 1E-05)
hg19
Number of total reads
32981011
Reads aligned (%)
96.0
Duplicates removed (%)
6.3
Number of peaks
24975 (qval < 1E-05)
Base call quality data from
DBCLS SRA