SRX134778
GSM902933: H3K9me3 KO ChIPSeq; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K9me3

Cell type

Cell type Class
Blood
Cell type
B cells
NA
NA

Attributes by original data submitter

Sample

source_name
B cell enriched splenocytes from KAP1 KO mouse
cell type
B cell enriched splenocytes
strain
C57BL/6 / sv129sv
chip antibody
H3K9me3 (Diagenode, pAb-056-050)
genotype/variation
KAP1 KO

Sequenced DNA Library

library_name
GSM902933: H3K9me3_KO_ChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
26254985
Reads aligned (%)
96.1
Duplicates removed (%)
68.8
Number of peaks
230 (qval < 1E-05)

mm9

Number of total reads
26254985
Reads aligned (%)
95.8
Duplicates removed (%)
69.0
Number of peaks
375 (qval < 1E-05)

Base call quality data from DBCLS SRA