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For hg38
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: NA
wikigenes
PDBj
CellType: Spleen
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX134738
Reference Epigenome: ChIP-Seq Analysis of H3K27me3 in Human Spleen Tissue
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
No description
Antigen
NA
Cell type
Cell type Class
Others
Cell type
Spleen
MeSH Description
An encapsulated lymphatic organ through which venous blood filters.
Attributes by original data submitter
Sample
MOLECULE
genomic DNA
DISEASE
None
BIOMATERIAL_PROVIDER
Shin Lin, Stanford University
BIOMATERIAL_TYPE
Primary Tissue
TISSUE_TYPE
Spleen
TISSUE_DEPOT
N/A
COLLECTION_METHOD
Autopsy
DONOR_ID
STL003
DONOR_AGE
34
DONOR_HEALTH_STATUS
polysubstance abuse (NO diabetes, hypertension, coronary artery disease, cancer)
DONOR_SEX
male
DONOR_ETHNICITY
Caucasian
sample_term_id
UBERON_0002106
Sequenced DNA Library
library_name
AK349
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
21783963
Reads aligned (%)
93.5
Duplicates removed (%)
4.9
Number of peaks
716 (qval < 1E-05)
hg19
Number of total reads
21783963
Reads aligned (%)
92.7
Duplicates removed (%)
6.7
Number of peaks
1006 (qval < 1E-05)
Base call quality data from
DBCLS SRA