Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
AR

Cell type

Cell type Class
Prostate
Cell type
C4-2
Tissue
Prostate
Cell Type
Epithelial
Disease
Prostate Cancer

Attributes by original data submitter

Sample

source_name
C4-2 cell
cell type
prostate cancer cell line
medium condition
In RPMI 1640 medium with 5% charcoal-stripped FBS (CSS)
cell line
C4-2
treatment
1uM palbociclib for 1 day, then treat 10nM dihydrotestosterone (DHT) for 4 hours
chip antibody
anti-AR (abcam)

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg38

Number of total reads
4901311
Reads aligned (%)
51.0
Duplicates removed (%)
23.8
Number of peaks
952 (qval < 1E-05)

hg19

Number of total reads
4901311
Reads aligned (%)
50.4
Duplicates removed (%)
25.3
Number of peaks
952 (qval < 1E-05)

Base call quality data from DBCLS SRA