SRX1339021
GSM1909092: MDA MB 453 ARChIPseq Input; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Breast
Cell type
MDA-MB-453
Primary Tissue
Breast
Site of Extraction
Effusion, Pericardial
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
Mammary gland/breast metastatic carcinoma
cell line
MDA_MB_453
gender
female
chip antibody
none (input)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP-seq was carried out as described by Schmidt et al. Methods 48, 240-8 (2009) Tru-seq libraries were prepared and sequenced by Illumina sequencing.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
30423026
Reads aligned (%)
98.9
Duplicates removed (%)
1.8
Number of peaks
587 (qval < 1E-05)

hg19

Number of total reads
30423026
Reads aligned (%)
98.3
Duplicates removed (%)
2.7
Number of peaks
979 (qval < 1E-05)

Base call quality data from DBCLS SRA