Antigen

Antigen Class

Input control

Antigen

Input control

Cell type

Cell type Class

Others

Cell type

C666-1

NA

NA

Sample

source_name

IgG CHIP-seq in C6661

cell line

C6661

cell type

EBV positive nasopharyngeal carcinoma (NPC) line

chip antibody

IgG

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

Lu et al, 2010 Virology journal 7, 262 TruSeq ChIP Sample Prep kit ChIP-Seq protocol is as described previously (Lu et al, 2010 Virology journal 7, 262). Total RNA was isolated for RNA-Seq using Trizol reagent.

Sequencing Platform

instrument_model

Illumina Genome Analyzer II

hg38

Number of total reads

26893038

Reads aligned (%)

95.2

Duplicates removed (%)

6.6

Number of peaks

951 (qval < 1E-05)

hg19

Number of total reads

26893038

Reads aligned (%)

94.4

Duplicates removed (%)

7.9

Number of peaks

1184 (qval < 1E-05)