SRX130607
GSM898059: OCI-LY1 H3K27Ac ChIP-seq:siNT

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27ac

Cell type

Cell type Class
Blood
Cell type
OCI-LY1
NA
NA

Attributes by original data submitter

Sample

source_name
Human DLBCL cel line
cell line
OCI-LY1
sirna transfection
siNT treated
chip antibody
H3K27Ac

Sequenced DNA Library

library_name
GSM898059: OCI-LY1_H3K27Ac_ChIP-seq:siNT
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
132201645
Reads aligned (%)
97.5
Duplicates removed (%)
58.4
Number of peaks
60626 (qval < 1E-05)

hg19

Number of total reads
132201645
Reads aligned (%)
97.4
Duplicates removed (%)
58.6
Number of peaks
60523 (qval < 1E-05)

Base call quality data from DBCLS SRA