SRX130588
GSM898365: Input l VC; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Epitope tags

Cell type

Cell type Class
Embryo
Cell type
Neural tube
NA
NA

Attributes by original data submitter

Sample

source_name
Embryonic day 12.5 vertebral column of wild type mice
tissue
E12.5 vertebral column
strain
CD1
ChIP
S-pepetide in wild type embryo [S-Pepetide - Bethyl laboratories (A-190-134A)]

Sequenced DNA Library

library_name
GSM898365: Input l_VC
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
28582684
Reads aligned (%)
94.9
Duplicates removed (%)
8.0
Number of peaks
2312 (qval < 1E-05)

mm9

Number of total reads
28582684
Reads aligned (%)
94.7
Duplicates removed (%)
8.0
Number of peaks
2294 (qval < 1E-05)

Base call quality data from DBCLS SRA