SRX130269
GSM897579: H293T H3K4me3 RNAi control; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Kidney
Cell type
293
Primary Tissue
Kidney
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
H293T_RNAi control_H3K4me3
cell line
H293T
genotype/variation
control (RNAi control)
chip antibody
H3K4me3
chip antibody vendor
Abcam

Sequenced DNA Library

library_name
GSM897579: H293T_H3K4me3 RNAi control
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
34509438
Reads aligned (%)
92.7
Duplicates removed (%)
33.1
Number of peaks
18875 (qval < 1E-05)

hg19

Number of total reads
34509438
Reads aligned (%)
92.1
Duplicates removed (%)
34.4
Number of peaks
18817 (qval < 1E-05)

Base call quality data from DBCLS SRA