SRX130257
GSM897560: Senescent H3K4me3 ChIP; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Lung
Cell type
IMR-90
Primary Tissue
Lung
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
Senescent H3K4me3 ChIP
cell line
IMR90
cell type
primary human fibroblasts
cell type
senescent cells
population doubling
87
chip antibody
H3K4me3
chip antibody vendor
Abcam

Sequenced DNA Library

library_name
GSM897560: Senescent H3K4me3 ChIP
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
129814696
Reads aligned (%)
64.7
Duplicates removed (%)
83.9
Number of peaks
13302 (qval < 1E-05)

hg19

Number of total reads
129814696
Reads aligned (%)
64.3
Duplicates removed (%)
84.7
Number of peaks
12621 (qval < 1E-05)

Base call quality data from DBCLS SRA