SRX130108
GSM896741: CtBP ChIPSeq; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTBP1

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
MCF-7 cells
cell type
Immortalized breast cancer cells
passages
15-18
chip antibody
CtBP
vendor
Santa Cruz

Sequenced DNA Library

library_name
GSM896741: CtBP_ChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
41256247
Reads aligned (%)
94.0
Duplicates removed (%)
28.0
Number of peaks
10448 (qval < 1E-05)

hg19

Number of total reads
41256247
Reads aligned (%)
93.2
Duplicates removed (%)
29.4
Number of peaks
10622 (qval < 1E-05)

Base call quality data from DBCLS SRA