Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Neural
Cell type
Frontal cortex
NA
NA

Attributes by original data submitter

Sample

tissue
middle frontal area 46
sample type
tissue
sex
female
dev_stage
adult
age
83 year
donor ID
ENCDO448ZXP
lab
Bradley Bernstein, Broad
source
Rush University

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
general protocol: https://www.encodeproject.org/documents/be2a0f12-af38-430c-8f2d-57953baab5f5/@@download/attachment/Epigenomics_Alternative_Mag_Bead_ChIP_Protocol_v1.1_exp.pdf

Sequencing Platform

instrument_model
NextSeq 500

hg38

Number of total reads
22986758
Reads aligned (%)
98.7
Duplicates removed (%)
4.5
Number of peaks
28329 (qval < 1E-05)

hg19

Number of total reads
22986758
Reads aligned (%)
98.1
Duplicates removed (%)
5.4
Number of peaks
28254 (qval < 1E-05)

Base call quality data from DBCLS SRA