Antigen

Antigen Class

TFs and others

Antigen

CTCF

Cell type

Cell type Class

Others

Cell type

Spleen

MeSH Description

An encapsulated lymphatic organ through which venous blood filters.

Sample

sample type

tissue

tissue

spleen

sex

female

health state

DM: no; HTN: no; CAD: no

dev_stage

adult

age

41 year

donor ID

ENCDO575WHY

lab

Michael Snyder, Stanford

source

Yiing Lin, MD, PhD

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

general protocol: https://www.encodeproject.org/documents/be2a0f12-af38-430c-8f2d-57953baab5f5/@@download/attachment/Epigenomics_Alternative_Mag_Bead_ChIP_Protocol_v1.1_exp.pdf

Sequencing Platform

instrument_model

NextSeq 500

hg38

Number of total reads

24103791

Reads aligned (%)

98.8

Duplicates removed (%)

4.0

Number of peaks

3665 (qval < 1E-05)

hg19

Number of total reads

24103791

Reads aligned (%)

97.8

Duplicates removed (%)

5.4

Number of peaks

3731 (qval < 1E-05)