ChIP-Atlas: SRX13006800

Sample information curated by ChIP-Atlas

Antigen

Antigen Class: TFs and others
Antigen: CTCF

Cell type

Cell type Class: Neural
Cell type: Frontal cortex
NA: NA

Attributes by original data submitter

Sample

sample_type: tissue
tissue: middle frontal area 46
sex: female
dev stage: adult
age: 88 year
donor ID: ENCDO669IVL
lab: Bradley Bernstein, Broad
source: Rush University

Sequenced DNA Library

library_strategy: ChIP-Seq
library_source: GENOMIC
library_selection: ChIP
library_construction_protocol: general protocol: https://www.encodeproject.org/documents/be2a0f12-af38-430c-8f2d-57953baab5f5/@@download/attachment/Epigenomics_Alternative_Mag_Bead_ChIP_Protocol_v1.1_exp.pdf

Sequencing Platform

instrument_model: NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads: 28132927
Reads aligned (%): 98.4
Duplicates removed (%): 8.3
Number of peaks: 40954 (qval < 1E-05)

hg19

Number of total reads: 28132927
Reads aligned (%): 97.7
Duplicates removed (%): 9.1
Number of peaks: 40790 (qval < 1E-05)

Base call quality data from DBCLS SRA