Antigen

Antigen Class

TFs and others

Antigen

CTCF

Cell type

Cell type Class

Others

Cell type

Adrenal Glands

MeSH Description

A pair of glands located at the cranial pole of each of the two KIDNEYS. Each adrenal gland is composed of two distinct endocrine tissues with separate embryonic origins, the ADRENAL CORTEX producing STEROIDS and the ADRENAL MEDULLA producing NEUROTRANSMITTERS.

Sample

sample_type

tissue

tissue

adrenal gland

sex

female

dev stage

adult

age

41 year

donor ID

ENCDO575WHY

lab

Michael Snyder, Stanford

source

Yiing Lin, MD, PhD

health state

DM: no; HTN: no; CAD: no

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

general protocol: https://www.encodeproject.org/documents/be2a0f12-af38-430c-8f2d-57953baab5f5/@@download/attachment/Epigenomics_Alternative_Mag_Bead_ChIP_Protocol_v1.1_exp.pdf

Sequencing Platform

instrument_model

NextSeq 500

hg38

Number of total reads

20010304

Reads aligned (%)

99.0

Duplicates removed (%)

4.7

Number of peaks

22793 (qval < 1E-05)

hg19

Number of total reads

20010304

Reads aligned (%)

98.0

Duplicates removed (%)

5.6

Number of peaks

22733 (qval < 1E-05)