SRX130020
GSM896917: 03212008 203MTAAXX B7; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H2BK119ub

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
Chromatin IP against H2Bub
chip antibody
H2BK119ub1
antibody catalog number
Moshe Oren MOSHE OREN LABORATOR
cell type
V6.5 embryonic stem cells

Sequenced DNA Library

library_name
GSM896917: 03212008_203MTAAXX_B7
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
6267327
Reads aligned (%)
70.8
Duplicates removed (%)
10.2
Number of peaks
556 (qval < 1E-05)

mm9

Number of total reads
6267327
Reads aligned (%)
70.7
Duplicates removed (%)
10.6
Number of peaks
574 (qval < 1E-05)

Base call quality data from DBCLS SRA