SRX129681
GSM896018: IgG; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Others
Cell type
TC-797
NA
NA

Attributes by original data submitter

Sample

source_name
TC-797
cell type
NUT Midline Carcinoma cell line
cell line
TC-797
Sex
female
antibody_target
IgG control

Sequenced DNA Library

library_name
GSM896018: IgG
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
100301553
Reads aligned (%)
45.6
Duplicates removed (%)
79.6
Number of peaks
8788 (qval < 1E-05)

hg19

Number of total reads
100301553
Reads aligned (%)
45.3
Duplicates removed (%)
81.4
Number of peaks
8648 (qval < 1E-05)

Base call quality data from DBCLS SRA