SRX129112
GSM894104: H2171 RNA POL2 1; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
RNA polymerase
Antigen
RNA polymerase II

Cell type

Cell type Class
Lung
Cell type
NCI-H2171
Primary Tissue
Lung
Site of Extraction
Effusion, Pleural
Tissue Diagnosis
Carcinoma Small Cell

Attributes by original data submitter

Sample

source_name
Small Cell Lung Carcinoma
chip antibody
RNA Pol II (Rpb1 N-terminus)
cell type
H2171

Sequenced DNA Library

library_name
GSM894104: H2171_RNA_POL2_1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
51191292
Reads aligned (%)
92.5
Duplicates removed (%)
37.3
Number of peaks
33630 (qval < 1E-05)

hg19

Number of total reads
51191292
Reads aligned (%)
91.9
Duplicates removed (%)
37.9
Number of peaks
33442 (qval < 1E-05)

Base call quality data from DBCLS SRA