SRX129085
GSM894077: U87 MAX; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
MAX

Cell type

Cell type Class
Neural
Cell type
U-87 MG
Primary Tissue
Brain
Tissue Diagnosis
Glioblastoma

Attributes by original data submitter

Sample

source_name
Glioblastoma
chip antibody
Max
cell type
U87

Sequenced DNA Library

library_name
GSM894077: U87_MAX
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
51775588
Reads aligned (%)
79.7
Duplicates removed (%)
18.5
Number of peaks
71166 (qval < 1E-05)

hg19

Number of total reads
51775588
Reads aligned (%)
79.1
Duplicates removed (%)
19.3
Number of peaks
70913 (qval < 1E-05)

Base call quality data from DBCLS SRA