SRX129076
GSM894068: P493-6 T0 H3K4ME3; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Blood
Cell type
P493-6
NA
NA

Attributes by original data submitter

Sample

source_name
B-cell lymphoma
chip antibody
H3K4me3
cell type
P493-6

Sequenced DNA Library

library_name
GSM894068: P493-6_T0_H3K4ME3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
35262690
Reads aligned (%)
95.4
Duplicates removed (%)
27.8
Number of peaks
29217 (qval < 1E-05)

hg19

Number of total reads
35262690
Reads aligned (%)
94.8
Duplicates removed (%)
27.8
Number of peaks
30135 (qval < 1E-05)

Base call quality data from DBCLS SRA