Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
ESC shPhf5a WITH LIF
cell type
mouse embryonic stem cells
strain
C57BL/6 X 129/Sv
cell line
KH2
chip antibody
H3K4me3 (Millipore, 07-473)

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

mm10

Number of total reads
36673079
Reads aligned (%)
98.7
Duplicates removed (%)
20.0
Number of peaks
37629 (qval < 1E-05)

mm9

Number of total reads
36673079
Reads aligned (%)
98.5
Duplicates removed (%)
20.0
Number of peaks
37708 (qval < 1E-05)

Base call quality data from DBCLS SRA