SRX128782
GSM722169: RUNX1 ChIP-seq in Jurkat 2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
RUNX1

Cell type

Cell type Class
Blood
Cell type
Jurkat (Clone E6-1)
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Acute Lymphocytic

Attributes by original data submitter

Sample

source_name
03232009_3140UAAXX_B7
chip antibody
RUNX1
antibody catalog number
Santa Cruz SC-8563
cell line
Jurkat E6-1
cell number
5 million

Sequenced DNA Library

library_name
GSM722169: RUNX1 ChIP-seq in Jurkat 2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
8061538
Reads aligned (%)
50.3
Duplicates removed (%)
41.5
Number of peaks
528 (qval < 1E-05)

hg38

Number of total reads
8061538
Reads aligned (%)
51.5
Duplicates removed (%)
40.5
Number of peaks
483 (qval < 1E-05)

Base call quality data from DBCLS SRA