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For hg19
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For hg38
BigWig
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Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: RUNX1
wikigenes
PDBj
CellType: Jurkat (Clone E6-1)
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX128782
GSM722169: RUNX1 ChIP-seq in Jurkat 2
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
RUNX1
Cell type
Cell type Class
Blood
Cell type
Jurkat (Clone E6-1)
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Acute Lymphocytic
Attributes by original data submitter
Sample
source_name
03232009_3140UAAXX_B7
chip antibody
RUNX1
antibody catalog number
Santa Cruz SC-8563
cell line
Jurkat E6-1
cell number
5 million
Sequenced DNA Library
library_name
GSM722169: RUNX1 ChIP-seq in Jurkat 2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer II
Where can I get the processing logs?
Read processing pipeline
log
hg19
Number of total reads
8061538
Reads aligned (%)
50.3
Duplicates removed (%)
41.5
Number of peaks
528 (qval < 1E-05)
hg38
Number of total reads
8061538
Reads aligned (%)
51.5
Duplicates removed (%)
40.5
Number of peaks
483 (qval < 1E-05)
Base call quality data from
DBCLS SRA