SRX1286384
GSM1893214: aTreg rep2 batch2; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27ac

Cell type

Cell type Class
Blood
Cell type
Treg
NA
NA

Attributes by original data submitter

Sample

source_name
CD4+ T cells
antibody
H3K27ac, Abcam, ab4729
cell source
Primary Mouse T cells isolated ex-vivo and sorted
cell type
activated CD4+ Treg cells (Foxp3-positive CD4+ T cells from DT-treated Foxp3DTR mice)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
DNA was extracted by ChIP-seq Standard Illumina library prep

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
29202701
Reads aligned (%)
91.4
Duplicates removed (%)
7.1
Number of peaks
5021 (qval < 1E-05)

mm9

Number of total reads
29202701
Reads aligned (%)
91.3
Duplicates removed (%)
7.1
Number of peaks
5041 (qval < 1E-05)

Base call quality data from DBCLS SRA