Antigen

Antigen Class

Histone

Antigen

H3K4me2

Cell type

Cell type Class

Others

Cell type

Bladder cancer

NA

NA

Sample

source_name

Primary bladder cancer

tissue

FFPE

antibody

H3K4me2 (Millipore, 07-030)

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

For ChIPseq:ThruPLEX-FD kits (Rubicon Genomics) was used and 75 bp single-end reads were sequenced on a NextSeq 500 instrument (Illumina). For RNAseq: TruSeq RNA Sample Preparation Kit (Illumina) was used according to the manufacturer's instructions and 75 bp single-end reads were sequenced on an Illumina NextSeq 500 instrument.

Sequencing Platform

instrument_model

NextSeq 500

hg38

Number of total reads

25230679

Reads aligned (%)

71.7

Duplicates removed (%)

3.7

Number of peaks

29381 (qval < 1E-05)

hg19

Number of total reads

25230679

Reads aligned (%)

71.4

Duplicates removed (%)

3.8

Number of peaks

29161 (qval < 1E-05)