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For hg38
BigWig
Peak-call (q < 1E-05)
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Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: RNA polymerase II
wikigenes
PDBj
CellType: 293
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX128198
GSM891240: RNA pol II ChIP-Seq Xrn2 shRNA; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
RNA polymerase
Antigen
RNA polymerase II
Cell type
Cell type Class
Kidney
Cell type
293
Primary Tissue
Kidney
Tissue Diagnosis
Normal
Attributes by original data submitter
Sample
source_name
HEK293, Xrn2 shRNA, RNA pol II ChIP
cell line
HEK293
shRNA
Xrn2
chip antibody
rabbit anti-pan CTD
growth protocol
Cells were grown in DMEM 10% FCS + puromycin.
Sequenced DNA Library
library_name
GSM891240: RNA pol II ChIP-Seq Xrn2 shRNA
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer IIx
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
8189303
Reads aligned (%)
89.3
Duplicates removed (%)
22.8
Number of peaks
14661 (qval < 1E-05)
hg19
Number of total reads
8189303
Reads aligned (%)
89.0
Duplicates removed (%)
22.9
Number of peaks
14622 (qval < 1E-05)
Base call quality data from
DBCLS SRA