SRX128195
GSM891237: RNA pol II ChIP-Seq parent control; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
RNA polymerase
Antigen
RNA polymerase II

Cell type

Cell type Class
Kidney
Cell type
293
Primary Tissue
Kidney
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
HEK293, RNA pol II ChIP
cell line
HEK293
shRNA
none
chip antibody
rabbit anti-pan CTD
growth protocol
Cells were grown in DMEM 10% FCS.

Sequenced DNA Library

library_name
GSM891237: RNA pol II ChIP-Seq parent control
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
5801441
Reads aligned (%)
86.1
Duplicates removed (%)
19.6
Number of peaks
17139 (qval < 1E-05)

hg19

Number of total reads
5801441
Reads aligned (%)
85.8
Duplicates removed (%)
19.6
Number of peaks
17191 (qval < 1E-05)

Base call quality data from DBCLS SRA