SRX128102
GSM889428: SKBR-3 TFAP2C; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
TFAP2C

Cell type

Cell type Class
Breast
Cell type
SK-BR-3
Primary Tissue
Breast
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
SKBR-3, TFAP2C ChIP
cell line
SKBR-3
chip antibody
TFAP2C monoclonal antibody
antibody vendor
Santa Cruz

Sequenced DNA Library

library_name
GSM889428: SKBR-3 TFAP2C
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
25721262
Reads aligned (%)
91.7
Duplicates removed (%)
11.5
Number of peaks
64898 (qval < 1E-05)

hg19

Number of total reads
25721262
Reads aligned (%)
91.3
Duplicates removed (%)
11.8
Number of peaks
64713 (qval < 1E-05)

Base call quality data from DBCLS SRA