SRX128101
GSM889427: MDA-MB-453 TFAP2C; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
TFAP2C

Cell type

Cell type Class
Breast
Cell type
MDA-MB-453
Primary Tissue
Breast
Site of Extraction
Effusion, Pericardial
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
MDA-MB-453, TFAP2C ChIP
cell line
MDA-MB-453
chip antibody
TFAP2C monoclonal antibody
antibody vendor
Santa Cruz

Sequenced DNA Library

library_name
GSM889427: MDA-MB-453 TFAP2C
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
27855429
Reads aligned (%)
92.5
Duplicates removed (%)
3.5
Number of peaks
31863 (qval < 1E-05)

hg19

Number of total reads
27855429
Reads aligned (%)
92.1
Duplicates removed (%)
3.9
Number of peaks
31977 (qval < 1E-05)

Base call quality data from DBCLS SRA