SRX127432
GSM886795: dme gd144 input 2to4h 1; Drosophila melanogaster; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Embryo
Cell type
2-4h embryos
NA
NA

Attributes by original data submitter

Sample

source_name
input DNA from gd7 embryos expressing the transgene twiBAC-snaPr-Yellow
tissue
whole gd7 embryos
tissue type
dorsal ectoderm
genotype
maternally gd7/gd7 mutants and zygotically expressing the transgene twiBAC-snaPr-Yellow
chip antibody
none (input)

Sequenced DNA Library

library_name
GSM886795: dme_gd144_input_2to4h_1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

dm6

Number of total reads
45270926
Reads aligned (%)
83.7
Duplicates removed (%)
4.5
Number of peaks
3047 (qval < 1E-05)

dm3

Number of total reads
45270926
Reads aligned (%)
84.1
Duplicates removed (%)
3.2
Number of peaks
0 (qval < 1E-05)

Base call quality data from DBCLS SRA