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Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: H3K4me2
wikigenes
PDBj
CellType: Hematopoietic progenitors
ATCC
MeSH
RIKEN BRC
SRX127408
GSM886542: 2-HPC H3K4me2 ChIPseq; Mus musculus; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Histone
Antigen
H3K4me2
Cell type
Cell type Class
Blood
Cell type
Hematopoietic progenitors
NA
NA
Attributes by original data submitter
Sample
source_name
HPC H3K4me2 ChIPseq
strain
129-M2rtTA
cell type
mouse hematopoietic progenitor cells
passage
0
chip antibody
H3K4me2
chip antibody vendor
Millipore
Sequenced DNA Library
library_name
GSM886542: 2-HPC H3K4me2 ChIPseq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
32759750
Reads aligned (%)
98.8
Duplicates removed (%)
28.9
Number of peaks
59303 (qval < 1E-05)
mm9
Number of total reads
32759750
Reads aligned (%)
98.7
Duplicates removed (%)
28.9
Number of peaks
59305 (qval < 1E-05)
Base call quality data from
DBCLS SRA