SRX127405
GSM886539: 3-APC-iPSC-9 H3K4me2 ChIPseq; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me2

Cell type

Cell type Class
Pluripotent stem cell
Cell type
iPS cells
NA
NA

Attributes by original data submitter

Sample

source_name
APC-iPSC H3K4me2 ChIPseq
strain
129-M2rtTA
cell type
APC-derived induced pluripotent stem cells
passage
10-12
chip antibody
H3K4me2
chip antibody vendor
Millipore

Sequenced DNA Library

library_name
GSM886539: 3-APC-iPSC-9 H3K4me2 ChIPseq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
21788419
Reads aligned (%)
98.7
Duplicates removed (%)
14.2
Number of peaks
50020 (qval < 1E-05)

mm9

Number of total reads
21788419
Reads aligned (%)
98.7
Duplicates removed (%)
14.2
Number of peaks
50160 (qval < 1E-05)

Base call quality data from DBCLS SRA