SRX127402
GSM886536: 1-MEF-iPSC-42 H3K4me2 ChIPseq; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me2

Cell type

Cell type Class
Pluripotent stem cell
Cell type
iPS cells
NA
NA

Attributes by original data submitter

Sample

source_name
MEF-iPSC H3K4me2 ChIPseq
strain
129-M2rtTA
cell type
MEF-derived induced pluripotent stem cells
passage
10-12
chip antibody
H3K4me2
chip antibody vendor
Millipore

Sequenced DNA Library

library_name
GSM886536: 1-MEF-iPSC-42 H3K4me2 ChIPseq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
34741597
Reads aligned (%)
98.7
Duplicates removed (%)
9.8
Number of peaks
66239 (qval < 1E-05)

mm9

Number of total reads
34741597
Reads aligned (%)
98.6
Duplicates removed (%)
9.9
Number of peaks
66304 (qval < 1E-05)

Base call quality data from DBCLS SRA