SRX127396
GSM886530: 3-APC H3K4me3 ChIPseq; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Adipocyte
Cell type
Adipose progenitor cells
NA
NA

Attributes by original data submitter

Sample

source_name
APC H3K4me3 ChIPseq
strain
129-M2rtTA
cell type
mouse adipose progenitor cells
passage
1
chip antibody
H3K4me3
chip antibody vendor
abcam

Sequenced DNA Library

library_name
GSM886530: 3-APC H3K4me3 ChIPseq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
31391212
Reads aligned (%)
99.2
Duplicates removed (%)
46.5
Number of peaks
36154 (qval < 1E-05)

mm9

Number of total reads
31391212
Reads aligned (%)
99.1
Duplicates removed (%)
46.5
Number of peaks
36171 (qval < 1E-05)

Base call quality data from DBCLS SRA