SRX127393
GSM886527: 1-MEF H3K4me3 ChIPseq; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Embryonic fibroblast
Cell type
MEF
Tissue
Embryonic Fibroblast
Lineage
primaryCells
Description
Mouse Embryonic Fibroblast

Attributes by original data submitter

Sample

source_name
MEF H3K4me3 ChIPseq
strain
129-M2rtTA
cell type
mouse embryonic fibroblast
passage
1
chip antibody
H3K4me3
chip antibody vendor
abcam

Sequenced DNA Library

library_name
GSM886527: 1-MEF H3K4me3 ChIPseq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
30350859
Reads aligned (%)
99.0
Duplicates removed (%)
50.6
Number of peaks
33707 (qval < 1E-05)

mm9

Number of total reads
30350859
Reads aligned (%)
98.9
Duplicates removed (%)
50.6
Number of peaks
33756 (qval < 1E-05)

Base call quality data from DBCLS SRA