SRX127382
GSM886516: 2-HPC H3K27me3 ChIPseq; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27me3

Cell type

Cell type Class
Blood
Cell type
Hematopoietic progenitors
NA
NA

Attributes by original data submitter

Sample

source_name
HPC H3K27me3 ChIPseq
strain
129-M2rtTA
cell type
mouse hematopoietic progenitor cells
passage
0
chip antibody
H3K27me3
chip antibody vendor
Millipore

Sequenced DNA Library

library_name
GSM886516: 2-HPC H3K27me3 ChIPseq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
32163696
Reads aligned (%)
99.1
Duplicates removed (%)
9.7
Number of peaks
932 (qval < 1E-05)

mm9

Number of total reads
32163696
Reads aligned (%)
99.0
Duplicates removed (%)
9.7
Number of peaks
930 (qval < 1E-05)

Base call quality data from DBCLS SRA