SRX127370
GSM886504: 3-APC input DNA; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Adipocyte
Cell type
Adipose progenitor cells
NA
NA

Attributes by original data submitter

Sample

source_name
APC input DNA
strain
129-M2rtTA
cell type
mouse adipose progenitor cells
passage
1

Sequenced DNA Library

library_name
GSM886504: 3-APC input DNA
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
32872833
Reads aligned (%)
98.8
Duplicates removed (%)
7.2
Number of peaks
252 (qval < 1E-05)

mm9

Number of total reads
32872833
Reads aligned (%)
98.7
Duplicates removed (%)
7.2
Number of peaks
249 (qval < 1E-05)

Base call quality data from DBCLS SRA