SRX12622734
GSM5627431: ChIPseq CA61 Cort-GR; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
NR3C1

Cell type

Cell type Class
Blood
Cell type
Lymphoblastoid cell line
Tissue
blood
Lineage
mesoderm
Description
parental cell type to lymphoblastoid cell lines

Attributes by original data submitter

Sample

source_name
B lymphoblastoid cell line
treatment
100nM hydrocortisone + 0.1% DMSO
antibody
GR

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ThruPLEX® DNA-seq Kit V2

Sequencing Platform

instrument_model
Illumina HiSeq 4000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
21720431
Reads aligned (%)
97.9
Duplicates removed (%)
6.3
Number of peaks
588 (qval < 1E-05)

hg19

Number of total reads
21720431
Reads aligned (%)
96.8
Duplicates removed (%)
6.8
Number of peaks
560 (qval < 1E-05)

Base call quality data from DBCLS SRA