SRX125274
GSM883647: CTCF ChIPSeq; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Ctcf

Cell type

Cell type Class
Pluripotent stem cell
Cell type
mESC derived neural cells
NA
NA

Attributes by original data submitter

Sample

source_name
Neural progenitor cells
cell type
ES-derived neural progenitor cells
strain
129SvJae x C57BL/6
gender
male
chip antibody
CTCF (Millipore; 07-729 DAM1772428)

Sequenced DNA Library

library_name
GSM883647: CTCF_ChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
73790596
Reads aligned (%)
23.4
Duplicates removed (%)
9.5
Number of peaks
38115 (qval < 1E-05)

mm9

Number of total reads
73790596
Reads aligned (%)
23.3
Duplicates removed (%)
9.9
Number of peaks
38032 (qval < 1E-05)

Base call quality data from DBCLS SRA