SRX124711
GSM883687: Crypt3 H3K27ac ChIPSeq; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27ac

Cell type

Cell type Class
Digestive tract
Cell type
Crypt
NA
NA

Attributes by original data submitter

Sample

source_name
Normal Colon Crypt_H3K27ac_ChIPSeq
cell type
Normal Colon Crypt
chip antibody
H3K27ac
chip antibody vendor
Abcam

Sequenced DNA Library

library_name
GSM883687: Crypt3_H3K27ac_ChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
102591635
Reads aligned (%)
78.3
Duplicates removed (%)
41.9
Number of peaks
67942 (qval < 1E-05)

hg19

Number of total reads
102591635
Reads aligned (%)
78.1
Duplicates removed (%)
42.0
Number of peaks
67727 (qval < 1E-05)

Base call quality data from DBCLS SRA