SRX124702
GSM883678: C104 input DNA; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Digestive tract
Cell type
Crypt
NA
NA

Attributes by original data submitter

Sample

source_name
Normal Colon Crypt_input DNA
cell type
Normal Colon Crypt

Sequenced DNA Library

library_name
GSM883678: C104_input DNA
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
37798758
Reads aligned (%)
98.1
Duplicates removed (%)
2.1
Number of peaks
1194 (qval < 1E-05)

hg19

Number of total reads
37798758
Reads aligned (%)
97.3
Duplicates removed (%)
3.7
Number of peaks
1436 (qval < 1E-05)

Base call quality data from DBCLS SRA