SRX124691
GSM883667: V429 input DNA; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Digestive tract
Cell type
Colon cancer
NA
NA

Attributes by original data submitter

Sample

source_name
Colon cancer_input DNA
cell type
Colon Cancer

Sequenced DNA Library

library_name
GSM883667: V429_input DNA
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
32888430
Reads aligned (%)
89.6
Duplicates removed (%)
2.8
Number of peaks
1094 (qval < 1E-05)

hg19

Number of total reads
32888430
Reads aligned (%)
88.8
Duplicates removed (%)
3.7
Number of peaks
879 (qval < 1E-05)

Base call quality data from DBCLS SRA