SRX124683
GSM883659: V703 H3K4me1 ChIPSeq; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me1

Cell type

Cell type Class
Digestive tract
Cell type
Colon cancer
NA
NA

Attributes by original data submitter

Sample

source_name
Colon cancer_H3K4me1_ChIPSeq
cell type
Colon Cancer
chip antibody
H3K4me1
chip antibody vendor
Abcam

Sequenced DNA Library

library_name
GSM883659: V703_H3K4me1_ChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
15899587
Reads aligned (%)
98.7
Duplicates removed (%)
2.0
Number of peaks
22498 (qval < 1E-05)

hg19

Number of total reads
15899587
Reads aligned (%)
98.4
Duplicates removed (%)
2.2
Number of peaks
22492 (qval < 1E-05)

Base call quality data from DBCLS SRA